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《核酸研究医学期刊》2007年第01期

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prophecy?a yeast phenome database update 00
expanded protein information at sgd: new pages and proteome browser
wormbook: the online review of caenorhabditis elegans biology
sequence resources at the candida genome database
the germonline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cdnas
parameciumdb: a community resource that integrates the paramecium tetraurelia genome sequence with genetic data
tbestdb: a taxonomically broad database of expressed sequence tags (ests)
vntrdb: a bacterial variable number tandem repeat locus database
xanthusbase: adapting wikipedia principles to a model organism database
apidb: integrated resources for the apicomplexan bioinformatics resource center
regtransbase?a database of regulatory sequences and interactions in a wide range of prokaryotic genomes
the sulfolobus database
mvirdb?a microbial database of protein toxins virulence factors and antibiotic resistance genes for bio-defence applications
towards pathogenomics: a web-based resource for pathogenicity islands
patric: the vbi pathosystems resource integration center
influenza virus database (ivdb): an integrated information resource and analysis platform for influenza virus research
vita: prediction of host micrornas targets on viruses
mist: a microbial signal transduction database
euhcvdb: the european hepatitis c virus database
hepseq: international public health repository for hepatitis b
the hiv positive selection mutation database
the national microbial pathogen database resource (nmpdr): a genomics platform based on subsystem annotation
pedant genome database: 0 years online
string ?recent developments in the integration and prediction of protein interactions
genome information broker for viruses (gib-v): database for comparative analysis of virus genomes
mbgd: a platform for microbial comparative genomics based on the automated construction of orthologous groups
go pad: the gene ontology partition database
genetrees: a phylogenomics resource for prokaryotes
eukaryotic genome size databases
the superfamily database in 00: families and functions
tmbeta-genome: database for annotated -barrel membrane proteins in genomic sequences
topofit-db a database of protein structural alignments based on the topofit method
the cath domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution
mmdb: annotating protein sequences with entrez
the worldwide protein data bank (wwpdb): ensuring a single uniform archive of pdb data
protein folding database (pfd .0): an online environment for the international foldeomics consortium
transportdb: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels
sharing of worldwide distributed carbohydrate-related digital resources: online connection of the bacterial carbohydrate structure database and glycosciences.de
glycomapsdb: a database of the accessible conformational space of glycosidic linkages
tigrfams and genome properties: tools for the assignment of molecular function and biological process in prokaryotic genomes
defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptides
rebase?enzymes and genes for dna restriction and modification
sentra: a database of signal transduction proteins for comparative genome analysis
panther version : protein sequence and function evolution data with expanded representation of biological pathways
sisyphus?structural alignments for proteins with non-trivial relationships
a protein classification benchmark collection for machine learning
domain family analysis
everest: a collection of evolutionary conserved protein domains
firedb?a database of functionally important residues from proteins of known structure
new developments in the interpro database
phosphod: a database of three-dimensional structures of protein phosphorylation sites
esldb: eukaryotic subcellular localization database
suba: the arabidopsis subcellular database
tassdb: a database of alternative tandem splice sites
the universal protein resource (uniprot)
bindingdb: a web-accessible database of experimentally determined proteincligand binding affinities
pidd: database for protein inter-atomic distance distributions
rnadb .0?an expanded database of mammalian non-coding rnas
sno/scarnabase: a curated database for small nucleolar rnas and cajal body-specific rnas
noncoding rnas database (ncrnadb)
polya_db : mrna polyadenylation sites in vertebrate genes
the ribosomal database project (rdp-ii): introducing myrdp space and quality controlled public data
redidb: the rna editing database
frnadb: a platform for mining/annotating functional rna candidates from non-coding rna sequences
mirgen: a database for the study of animal microrna genomic organization and function
natsdb: natural antisense transcripts database
tractor_db (version .0): a database of regulatory interactions in gamma-proteobacterial genomes
tred: a transcriptional regulatory element database new entries and other development
dbres: a web-oriented database for annotated rna editing sites
premod: a database of genome-wide mammalian cis-regulatory module predictions
swissregulon: a database of genome-wide annotations of regulatory sites
h-dbas: alternative splicing database of completely sequenced and manually annotated full-length cdnas based on h-invitational
udb: a database of orthologous u-type spliceosomal introns
genometrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microrna encoding genes conse..
vista enhancer browser?a database of tissue-specific human enhancers
the asap ii database: analysis and comparative genomics of alternative splicing in animal species
ecgene: an alternative splicing database update
snpstr: a database of compound microsatellite-snp markers
sgdb: a database of synthetic genes re-designed for optimizing protein over-expression
trdb?the tandem repeats database
pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation
ncbi reference sequences (refseq): a curated non-redundant sequence database of genomes transcripts and proteins
retroryza: a database of the rice ltr-retrotransposons
oridb: a dna replication origin database
patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications
polymirts database: linking polymorphisms in microrna target sites with complex traits
entrez gene: gene-centered information at ncbi
developments in corg: a gene-centric comparative genomics resource
insatdb: a microsatellite database of fully sequenced insect genomes
the molecular biology database collection: 00 update
database resources of the national center for biotechnology information
ddbj working on evaluation and classification of bacterial genes in insdc
embl nucleotide sequence database in 00
genbank
beetlebase: the model organism database for tribolium castaneum
drospege: rapid access database for new drosophila species genomes
genomernai: a database for cell-based rnai phenotypes
pristionchus.org: a genome-centric database of the nematode satellite species pristionchus pacificus
vectorbase: a home for invertebrate vectors of human pathogens
wormbase: new content and better access
brenda amenda and frenda: the enzyme information system in 00
macie (mechanism annotation and classification in enzymes): novel tools for searching catalytic mechanisms
hmdb: the human metabolome database
lmsd: lipid maps structure database
systomonas ? an integrated database for systems biology analysis of pseudomonas
cellcircuits: a database of protein network models
cutdb: a proteolytic event database
cyclonet?an integrated database on cell cycle regulation and carcinogenesis
domino: a database of domaincpeptide interactions
intact?open source resource for molecular interaction data
michigan molecular interactions (mimi): putting the jigsaw puzzle together
mint: the molecular interaction database
protcom: searchable database of protein complexes enhanced with domaincdomain structures
snappi-db: a database and api of structures interfaces and alignments for proteincprotein interactions
unihi: an entry gate to the human protein interactome
hedgehog signaling pathway database: a repository of current annotation efforts and resources for the hh research community
agbase: a unified resource for functional analysis in agriculture
animalqtldb: a livestock qtl database tool set for positional qtl information mining and beyond
ensembl 00
the mouse gene expression database (gxd): 00 update
mampol: a database of nucleotide polymorphism in the mammalia class
the mouse genome database (mgd): new features facilitating a model system
mouse tumor biology database (mtb): status update and future directions
mouse phenome database (mpd)
pede (pig est data explorer) has been expanded into pig expression data explorer including 0 porcine full-length cdna sequences
piggis: pig genomic informatics system
the rat genome database update 00?easing the path from disease to data and back again
the encode project at uc santa cruz
the ucsc genome browser database: update 00
genespeed: protein domain organization of the transcriptome
plasmid: a centralized repository for plasmid clone information and distribution
d-haplodb: a database of definitive haplotypes determined by genotyping complete hydatidiform mole samples
findbase: a relational database recording frequencies of genetic defects leading to inherited disorders worldwide
phenomicdb: a new cross-species genotype/phenotype resource
polydoms: a whole genome database for the identification of non-synonymous coding snps with the potential to impact disease
snap: an integrated snp annotation platform
snp@ethnos: a database of ethnically variant single-nucleotide polymorphisms
variation resources at uc santa cruz
cancergenes: a gene selection resource for cancer genome projects
oncodb.hcc: an integrated oncogenomic database of hepatocellular carcinoma revealed aberrant cancer target genes and loci
kberg: knowledgebase for estrogen responsive genes
syndb: a synapse protein database based on synapse ontology
tdbase: integration and presentation of complex data for type diabetes research
arrayexpress?a public database of microarray experiments and gene expression profiles
epcondb: a web resource for gene expression related to pancreatic development beta-cell function and diabetes
gene aging nexus: a web database and data mining platform for microarray data on aging
ncbi geo: mining tens of millions of expression profiles?database and tools update
the stanford microarray database: implementation of new analysis tools and open source release of software
mapu: max-planck unified database of organellar cellular tissue and body fluid proteomes
the online bioinformatics resources collection at the university of pittsburgh health sciences library system?a one-stop gateway to online bioinformatics databases ..
disprot: the database of disordered proteins
pharmged: pharmacogenetic effect database
probebase?an online resource for rrna-targeted oligonucleotide probes: new features 00
qprimerdepot: a primer database for quantitative real time pcr
peroxisomedb: a database for the peroxisomal proteome functional genomics and disease
organelle db: an updated resource of eukaryotic protein localization and function
enhanced mitomap with a global mtdna mutational phylogeny
csrdb: a small rna integrated database and browser resource for cereals
mipsplantsdb?plant database resource for integrative and comparative plant genome research
pathoplant
the tigr plant transcript assemblies database
pogs/plantrbp: a resource for comparative genomics in plants
athamap web tools for the analysis and identification of co-regulated genes
atted-ii: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in arabidopsis
basc: an integrated bioinformatics system for brassica research
gabi-kat simplesearch: an arabidopsis thaliana t-dna mutant database with detailed information for confirmed insertions
plantqtl-ge: a database system for identifying candidate genes in rice and arabidopsis by gene expression and qtl information
the tigr rice genome annotation resource: improvements and new features
foresttreedb: a database dedicated to the mining of tree transcriptomes
maizegdb
tomatest database: in silico exploitation of est data to explore expression patterns in tomato species
superhapten: a comprehensive database for small immunogenic compounds
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